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Garrek Stemo

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The Future of Software Development in Science

Thursday, August 19, 2021  ⚓︎

The future of scientific software development will be cloud-based together with apps that use web technologies rather than platform-specific (“native”) applications despite recent mobile computing hardware advances. Advancements in computing tools and languages are already changing science to, for example, improve reproducibility of results and facilitate better collaboration. These same tools are helping to move development itself into the cloud and are migrating the community to web-based technologies and away from native apps and frameworks.

Mobile development for the scientific community now means programming on a laptop since there are very few scientific tools available on tablets and phones. “Mobile” in the everyday sense refers to, of course, smartphones and tablets. Eventually, scientific programming will move to these mobile platforms. I’m thinking of a tablet that can perform analysis, run a notebook environment, or even run certain kinds of simulations. You will be able to hook it up to measurement devices1 or controllers. At conferences, you will be able to answer questions by running your actual simulation live with different variables and show it to someone. There is a lot of great desktop-class software, proprietary and open-source, that powers science today. None of this will be a part of the mobile future. It will all be done in the cloud and with web technologies.

The discussion around native versus web technology frameworks is already robust in programming circles2, so I approach the topic as a researcher looking for mobile and cross-platform solutions. I try to answer these two questions:

I briefly describe the problems of the current fragmented ecosystem, how that ecosystem is converging on open-source tools, and then how the emerging cloud-based computing paradigm will shape scientific computing on mobile devices.

The fragmented ecosystem

The trajectory of scientific programming is interesting because it seems to be converging on a few tools from a historically fragmented and siloed ecosystem. Chemists, for example, use their particular flavors of modeling and analysis software (like Gaussian or ORCA), and Fortran is used for much of climate science. The fragmentation makes sense because of the wide range of applications that scientific programming must serve, including modeling, analysis, visualization, and instrument control. Furthermore, scientists are often not trained in programming, leading to large gaps in ability even within a single laboratory.

These factors lead to several problems and realities within the programmatic scientific community. These include:

  1. Code that is often not reusable or readable across (or within) scientific disciplines. An example of this is the graduate student who writes software for their project, which nobody knows how to modify after they leave.

  2. Domain-specific applications that inhibit cross-disciplinary collaboration. This includes proprietary software that, while effective, is not shareable because of cost or underutilization. Barriers to entry exist also because only a subset of people learn how to use a particular piece of software and would-be collaborators use something different.

  3. Complicated old code that stalls development. Changing an old code base is a monumental task because the expertise that created the code has moved on. This is often the case with complex and large code bases that work, but nobody knows how. Making changes or sharing can require a complete rewrite.

The problems are more apparent today because the frontiers of science are increasingly cross-disciplinary. Without shareable and reusable code, there is considerable friction when trying to collaborate3.

Convergence to open-source tools

Several technologies are now maturing and their convergence is solving some of these problems. The transition will take a long time — decades-old code bases need to be rewritten and new libraries need to be built — but I expect the scientific programming landscape to be very different ten years from now.

The wide-spread adoption of Python, R, and Jupyter in the scientific community has solved many of the readability the share-ability problems4. Many projects now bundle Jupyter notebooks to demonstrate how the code works. Python is easy to read, easy to write, and open-source, making it an obvious choice for many to replace proprietary analysis software. The interactive coding environment of Jupyter is also having a major impact on scientific coding. Someone reading a scientific paper no longer has to take the author’s word that the modeling and analysis are sound; they can go on GitHub and run the software themselves.

A level above programming languages is apps for developing scientific software and doing analysis. There are a lot of apps out there, but a major component of development will use web technologies because of their inherent interoperability. Jupyter notebooks, for example, can be opened in the browser, meaning anyone can create and share something created in Jupyter without obscure or proprietary software. Jupyter can now also be used in Visual Studio Code, the popular, flexible, and rapidly-improving editor that is based on the web-technology platform, Electron.

The growing popularity of web technologies in science foreshadows the biggest change on the horizon, the move to cloud-based computing.

Cloud-based computing for science

Mobile devices are finally powerful and flexible enough that most people’s primary computing device is a smartphone. If this is the case, then one might think that they must be powerful enough for scientific applications. So, where are all of these great tools?

Ever since the iPad Pro came out in 20185, I have been searching for ways to fit it into my research workflow. So far, the best use-case for it is reading and annotating journal articles. This great, but nowhere near the mobile computing workstation I outlined above. The reason I still cannot do analysis or share a simulation on an iPad is that Python, Jupyter, an editor, graphing software, etc. are not available for it — and my iPad is faster and more powerful (in many respects) than my Mac6.

As I look around for solutions, it seems that the answer is to wait for cloud-based development to mature. Jupyter already has notebooks in the cloud via JupyterHub. A service called Binder promises to host notebook repositories and make code “immediately reproducible by anyone, anywhere”. Github will soon debut its Codespaces cloud platform, and the Julia community (a promising open-source scientific programming language) has put their resources into Jupyter and VS Code. Julia Computing has also introduced JuliaHub, Julia’s answer to cloud computing. Legacy tools for science trying to stay relevant are also moving to the cloud (see MatLab in the cloud, Mathematica Online, etc.). Any app or platform that does not make the move will likely become irrelevant as code-bases transition.

There are no mobile-first solutions from any of the major players in scientific software despite the incredible progress in mobile hardware7. Today I can write and run my software in a first-generation cloud-based environment or switch to my traditional computing workstation.


What lies ahead for scientific programming? Maybe Julia will continue its meteoric trajectory and become the de facto programming language for science and scientific papers will come attached with Jupyter notebooks. Maybe code will become so easy to share and reuse that the niche and proprietary software that keeps the disciplines siloed will become obsolete. These would be huge changes for the scientific community, but I think any of these kinds of changes in the software space are compounded by the coming cloud computing shift. Scientific development will happen in the cloud and code will be more reproducible and shareable than it is today as a result.

This future is different from the mobile computing world that I imagined, where devices would shrink and simultaneously become powerful enough that a thin computing slab empowered by a suite of on-device scientific tools could fulfill most of my computing needs. Instead, the mobile device will become a window to servers that will host my software. Reproducible and reusable code will proliferate as a result, but where does that leave the raw power of mobile computing devices?

  1. This just became possible with the Moku devices coming out of Liquid Instruments

  2. See the current controversy over OnePassword choosing to make their macOS app using Electron instead of one of Apple’s frameworks. 

  3. Katharine Hyatt describes these problems in the first few minutes of an excellent talk on using Julia for Quantum Physics. 

  4. Another potential avenue for convergence is the ascent of the Julia open-source programming language, which promises to replace both high-performance code, higher-level analysis software, while making code reuse easy and natural. The language is still far from any sort of standard, but there are promising examples of its use

  5. The iPad is, unfortunately, the only real contender in the mobile platform space. The Android ecosystem has not yet come up with a serious competitor that matches the performance of the iPad. 

  6. Specifically, Apple does not allow code execution on its mobile operating systems. 

  7. A great Twitter thread by Steven Sinofsky, former head of Windows, details the evolution of computing devices.